IL_6NWY_040

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

6NWY|1|QA|A|994, 6NWY|1|QA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_040 not in the Motif Atlas

Homologous match to IL_5J7L_043

Geometric discrepancy: 0.2676

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6NWY|1|QA|G|993
6NWY|1|QA|A|994
6NWY|1|QA|C|995
6NWY|1|QA|A|996
6NWY|1|QA|U|997
*
6NWY|1|QA|A|1044
6NWY|1|QA|C|1045

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z