IL_6NWY_055

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CACG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_055 not in the Motif Atlas

Geometric match to IL_8CRE_469

Geometric discrepancy: 0.2515

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28833.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6NWY|1|QA|C|1407
6NWY|1|QA|A|1408
6NWY|1|QA|C|1409
6NWY|1|QA|G|1410
*
6NWY|1|QA|C|1490
6NWY|1|QA|G|1491
6NWY|1|QA|A|1492
6NWY|1|QA|A|1493
6NWY|1|QA|G|1494

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain RA

Large subunit ribosomal RNA; LSU rRNA