IL_6NWY_070

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_070 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.1903

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6NWY|1|RA|C|280
6NWY|1|RA|G|281
6NWY|1|RA|A|282
6NWY|1|RA|A|283
6NWY|1|RA|U|284
*
6NWY|1|RA|A|357
6NWY|1|RA|U|358
6NWY|1|RA|A|359
6NWY|1|RA|G|360

Current chains

Chain RA

23S rRNA

Nearby chains