IL_6NWY_071

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6NWY|1|RA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_071 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.1372

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6NWY|1|RA|C|288
6NWY|1|RA|A|289
6NWY|1|RA|G|290
*
6NWY|1|RA|U|350
6NWY|1|RA|G|351
6NWY|1|RA|G|352
6NWY|1|RA|G|353

Current chains

Chain RA

23S rRNA

Nearby chains