IL_6NWY_077

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6NWY|1|RA|G|801, 6NWY|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_077 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.1

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6NWY|1|RA|G|674
6NWY|1|RA|A|675
6NWY|1|RA|A|676
6NWY|1|RA|A|677
6NWY|1|RA|C|678
*
6NWY|1|RA|G|799
6NWY|1|RA|A|800
6NWY|1|RA|G|801
6NWY|1|RA|A|802
6NWY|1|RA|U|803
6NWY|1|RA|A|804
6NWY|1|RA|G|805
6NWY|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15