IL_6NWY_100

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6NWY|1|RA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_100 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3292

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6NWY|1|RA|C|1043
6NWY|1|RA|G|1044
6NWY|1|RA|A|1045
6NWY|1|RA|A|1046
6NWY|1|RA|G|1047
6NWY|1|RA|A|1048
6NWY|1|RA|C|1049
6NWY|1|RA|A|1050
6NWY|1|RA|G|1051
*
6NWY|1|RA|U|1108
6NWY|1|RA|C|1109
6NWY|1|RA|G|1110
6NWY|1|RA|A|1111
6NWY|1|RA|G|1112

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6