IL_6NWY_183

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACCC*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_183 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.256

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6NWY|1|XA|A|185
6NWY|1|XA|C|186|||A
6NWY|1|XA|C|186|||B
6NWY|1|XA|C|186|||C
*
6NWY|1|XA|G|186|||P
6NWY|1|XA|U|186|||Q
6NWY|1|XA|G|191
6NWY|1|XA|U|192

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20