IL_6NWY_184

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6NWY|1|XA|U|244, 6NWY|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_184 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1063

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6NWY|1|XA|C|242
6NWY|1|XA|A|243
6NWY|1|XA|U|244
6NWY|1|XA|C|245
6NWY|1|XA|A|246
6NWY|1|XA|G|247
*
6NWY|1|XA|C|277
6NWY|1|XA|G|278
6NWY|1|XA|A|279
6NWY|1|XA|C|280
6NWY|1|XA|G|281
6NWY|1|XA|A|282
6NWY|1|XA|C|283
6NWY|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17