IL_6NWY_310

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_310 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1286

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6NWY|1|YA|G|1856
6NWY|1|YA|G|1857
6NWY|1|YA|G|1858
6NWY|1|YA|A|1859
6NWY|1|YA|G|1860
*
6NWY|1|YA|C|1882
6NWY|1|YA|G|1883
6NWY|1|YA|A|1884
6NWY|1|YA|A|1885
6NWY|1|YA|C|1886

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28