IL_6NY6_037

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

6NY6|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_037 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.2001

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6NY6|1|A|G|933
6NY6|1|A|C|934
6NY6|1|A|A|935
6NY6|1|A|C|936
*
6NY6|1|A|G|1379
6NY6|1|A|U|1380
6NY6|1|A|U|1381
6NY6|1|A|C|1382
6NY6|1|A|C|1383
6NY6|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9