IL_6NY6_046

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_046 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.2215

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

6NY6|1|A|C|1128
6NY6|1|A|C|1129
6NY6|1|A|A|1130
6NY6|1|A|G|1131
6NY6|1|A|C|1132
*
6NY6|1|A|G|1142
6NY6|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9