IL_6O0Z_002

3D structure

PDB id

6O0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

6O0Z|1|B|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O0Z_002 not in the Motif Atlas

Geometric match to IL_4ZT0_004

Geometric discrepancy: 0.0807

The information below is about IL_4ZT0_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6O0Z|1|B|G|54
6O0Z|1|B|C|55
*
6O0Z|1|B|G|58
6O0Z|1|B|U|59
6O0Z|1|B|C|60

Current chains

Chain B

single guide RNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1