IL_6O3M_020

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1166

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6O3M|1|QA|C|504
6O3M|1|QA|G|505
6O3M|1|QA|G|506
6O3M|1|QA|C|507
6O3M|1|QA|C|508
6O3M|1|QA|A|509
6O3M|1|QA|A|510
6O3M|1|QA|C|511
*
6O3M|1|QA|G|540
6O3M|1|QA|G|541

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12