IL_6O3M_082

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

6O3M|1|RA|G|776, 6O3M|1|RA|A|788, 6O3M|1|RA|A|789, 6O3M|1|RA|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_082 not in the Motif Atlas

Geometric match to IL_4WF9_027

Geometric discrepancy: 0.0937

The information below is about IL_4WF9_027

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6O3M|1|RA|G|775
6O3M|1|RA|G|776
6O3M|1|RA|A|777
*
6O3M|1|RA|U|787
6O3M|1|RA|A|788
6O3M|1|RA|A|789
6O3M|1|RA|C|790
6O3M|1|RA|C|791

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2

Chain RF

50S ribosomal protein L4

Chain RW

50S ribosomal protein L22