IL_6O3M_142

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

6O3M|1|RA|C|2111, 6O3M|1|RA|G|2112, 6O3M|1|RA|U|2113, 6O3M|1|RA|A|2114, 6O3M|1|RA|G|2115, 6O3M|1|RA|U|2118, 6O3M|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_142 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2699

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6O3M|1|RA|G|2110
6O3M|1|RA|C|2111
6O3M|1|RA|G|2112
6O3M|1|RA|U|2113
6O3M|1|RA|A|2114
6O3M|1|RA|G|2115
6O3M|1|RA|G|2116
6O3M|1|RA|A|2117
6O3M|1|RA|U|2118
6O3M|1|RA|A|2119
6O3M|1|RA|G|2120
6O3M|1|RA|G|2121
*
6O3M|1|RA|C|2177
6O3M|1|RA|C|2178
6O3M|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains