IL_6O3M_205

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_205 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.098

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6O3M|1|XA|G|887
6O3M|1|XA|G|888
6O3M|1|XA|A|889
6O3M|1|XA|G|890
6O3M|1|XA|U|891
6O3M|1|XA|A|892
6O3M|1|XA|C|893
6O3M|1|XA|G|894
*
6O3M|1|XA|U|905
6O3M|1|XA|G|906
6O3M|1|XA|A|907
6O3M|1|XA|A|908
6O3M|1|XA|A|909
6O3M|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17