3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
6O3M|1|YA|U|504, 6O3M|1|YA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O3M_248 not in the Motif Atlas
Geometric match to IL_7RQB_014
Geometric discrepancy: 0.0785
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

6O3M|1|YA|G|481
6O3M|1|YA|A|482
6O3M|1|YA|A|483
6O3M|1|YA|C|484
*
6O3M|1|YA|G|496
6O3M|1|YA|A|497
6O3M|1|YA|G|498
6O3M|1|YA|U|499
6O3M|1|YA|G|500
6O3M|1|YA|A|501
6O3M|1|YA|A|502
6O3M|1|YA|A|503
6O3M|1|YA|U|504
6O3M|1|YA|A|505
6O3M|1|YA|G|506
6O3M|1|YA|A|507
6O3M|1|YA|G|508
6O3M|1|YA|C|509

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YW
50S ribosomal protein L22
Chain YY
50S ribosomal protein L24

Coloring options:


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