3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6O3M_250 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1279
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6O3M|1|YA|U|606
6O3M|1|YA|U|607
6O3M|1|YA|A|608
6O3M|1|YA|A|609
6O3M|1|YA|G|609|||A
*
6O3M|1|YA|C|618|||A
6O3M|1|YA|G|619
6O3M|1|YA|G|620
6O3M|1|YA|A|621
6O3M|1|YA|G|622

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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