IL_6O3M_267

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

6O3M|1|YA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_267 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.3413

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6O3M|1|YA|G|880
6O3M|1|YA|G|881
6O3M|1|YA|G|882
6O3M|1|YA|G|883
*
6O3M|1|YA|C|893
6O3M|1|YA|C|894
6O3M|1|YA|U|895
6O3M|1|YA|A|896
6O3M|1|YA|C|897

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25