IL_6O3M_334

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6O3M|1|YA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_334 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0977

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6O3M|1|YA|U|2636
6O3M|1|YA|U|2637
6O3M|1|YA|G|2638
6O3M|1|YA|A|2639
6O3M|1|YA|G|2640
*
6O3M|1|YA|C|2774
6O3M|1|YA|A|2775
6O3M|1|YA|A|2776
6O3M|1|YA|G|2777
6O3M|1|YA|A|2778
6O3M|1|YA|U|2779
6O3M|1|YA|G|2780
6O3M|1|YA|A|2781
6O3M|1|YA|G|2782

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YN

50S ribosomal protein L13