IL_6O3M_366

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6O3M|1|YA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_366 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2921

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6O3M|1|YA|C|1043
6O3M|1|YA|G|1044
6O3M|1|YA|A|1045
6O3M|1|YA|A|1046
6O3M|1|YA|G|1047
6O3M|1|YA|A|1048
6O3M|1|YA|C|1049
6O3M|1|YA|A|1050
6O3M|1|YA|G|1051
*
6O3M|1|YA|U|1108
6O3M|1|YA|C|1109
6O3M|1|YA|G|1110
6O3M|1|YA|A|1111
6O3M|1|YA|G|1112

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6