IL_6O3M_375

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6O3M|1|YA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O3M_375 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.2116

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09044.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6O3M|1|YA|G|1526
6O3M|1|YA|G|1527
6O3M|1|YA|A|1528
6O3M|1|YA|A|1529
6O3M|1|YA|G|1530
*
6O3M|1|YA|U|1541
6O3M|1|YA|G|1542
6O3M|1|YA|A|1543
6O3M|1|YA|C|1544
6O3M|1|YA|A|1545
6O3M|1|YA|A|1545|||A
6O3M|1|YA|C|1546

Current chains

Chain YA

23S rRNA

Nearby chains