IL_6O7K_014

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6O7K|1|g|U|244, 6O7K|1|g|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O7K_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1382

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6O7K|1|g|G|242
6O7K|1|g|A|243
6O7K|1|g|U|244
6O7K|1|g|U|245
6O7K|1|g|A|246
6O7K|1|g|G|247
*
6O7K|1|g|C|277
6O7K|1|g|G|278
6O7K|1|g|A|279
6O7K|1|g|C|280
6O7K|1|g|G|281
6O7K|1|g|A|282
6O7K|1|g|U|283
6O7K|1|g|C|284

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S17

Chain t

30S ribosomal protein S12