IL_6O7K_023

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O7K_023 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1438

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6O7K|1|g|G|450
6O7K|1|g|A|451
6O7K|1|g|A|452
6O7K|1|g|G|453
6O7K|1|g|G|454
6O7K|1|g|G|455
*
6O7K|1|g|C|477
6O7K|1|g|A|478
6O7K|1|g|U|479
6O7K|1|g|U|480
6O7K|1|g|G|481
6O7K|1|g|A|482
6O7K|1|g|C|483

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S16