IL_6O7K_047

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6O7K|1|g|C|1200, 6O7K|1|g|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O7K_047 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0918

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6O7K|1|g|G|1057
6O7K|1|g|G|1058
*
6O7K|1|g|U|1199
6O7K|1|g|C|1200
6O7K|1|g|A|1201
6O7K|1|g|U|1202
6O7K|1|g|C|1203

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain r

30S ribosomal protein S10

Chain w

30S ribosomal protein S14