IL_6O8W_015

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAUC

Length

18 nucleotides

Bulged bases

6O8W|1|A|U|543, 6O8W|1|A|U|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_015 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.135

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

6O8W|1|A|G|521
6O8W|1|A|C|522
6O8W|1|A|A|523
6O8W|1|A|C|524
*
6O8W|1|A|G|535
6O8W|1|A|A|536
6O8W|1|A|G|537
6O8W|1|A|U|538
6O8W|1|A|G|539
6O8W|1|A|A|540
6O8W|1|A|A|541
6O8W|1|A|A|542
6O8W|1|A|U|543
6O8W|1|A|A|544
6O8W|1|A|G|545
6O8W|1|A|A|546
6O8W|1|A|U|547
6O8W|1|A|C|548

Current chains

Chain A

50S subunit

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24