IL_6O8W_040
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6O8W|1|A|A|1066, 6O8W|1|A|A|1167, 6O8W|1|A|U|1170, 6O8W|1|A|A|1173, 6O8W|1|A|C|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6O8W_040 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1544
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6O8W|1|A|G|1064
6O8W|1|A|G|1065
6O8W|1|A|A|1066
6O8W|1|A|A|1067
6O8W|1|A|A|1068
6O8W|1|A|A|1069
6O8W|1|A|G|1070
*
6O8W|1|A|C|1164
6O8W|1|A|G|1165
6O8W|1|A|A|1166
6O8W|1|A|A|1167
6O8W|1|A|A|1168
6O8W|1|A|A|1169
6O8W|1|A|U|1170
6O8W|1|A|G|1171
6O8W|1|A|U|1172
6O8W|1|A|A|1173
6O8W|1|A|C|1174
6O8W|1|A|C|1175
6O8W|1|A|G|1176
6O8W|1|A|G|1177
6O8W|1|A|G|1178
6O8W|1|A|G|1179
6O8W|1|A|C|1180
Current chains
- Chain A
- 50S subunit
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L16
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