IL_6O8W_050

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_050 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1755

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6O8W|1|A|G|1346
6O8W|1|A|U|1347
6O8W|1|A|U|1348
6O8W|1|A|U|1349
*
6O8W|1|A|A|1646
6O8W|1|A|C|1647

Current chains

Chain A

50S subunit

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23