IL_6O8W_066

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGCAAAA*UGAAGUAUA

Length

16 nucleotides

Bulged bases

6O8W|1|A|A|1815, 6O8W|1|A|A|1830, 6O8W|1|A|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_066 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1242

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6O8W|1|A|U|1812
6O8W|1|A|G|1813
6O8W|1|A|C|1814
6O8W|1|A|A|1815
6O8W|1|A|A|1816
6O8W|1|A|A|1817
6O8W|1|A|A|1818
*
6O8W|1|A|U|1827
6O8W|1|A|G|1828
6O8W|1|A|A|1829
6O8W|1|A|A|1830
6O8W|1|A|G|1831
6O8W|1|A|U|1832
6O8W|1|A|A|1833
6O8W|1|A|U|1834
6O8W|1|A|A|1835

Current chains

Chain A

50S subunit

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA