IL_6O8W_071

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_071 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.132

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6O8W|1|A|A|1870
6O8W|1|A|G|1871
6O8W|1|A|G|1872
6O8W|1|A|A|1873
6O8W|1|A|U|1874
*
6O8W|1|A|A|1896
6O8W|1|A|G|1897
6O8W|1|A|A|1898
6O8W|1|A|A|1899
6O8W|1|A|U|1900

Current chains

Chain A

50S subunit

Nearby chains

Chain u

Transfer RNA; tRNA