IL_6O8W_112

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGGAAG*UGAG*G

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8W_112 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2244

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

6O8W|1|A|U|2858
6O8W|1|A|G|2859
6O8W|1|A|G|2860
6O8W|1|A|A|2861
6O8W|1|A|A|2862
6O8W|1|A|G|2863
*
6O8W|1|A|U|2876
6O8W|1|A|G|2877
6O8W|1|A|A|2879
6O8W|1|A|G|2880
*
6O8W|1|A|G|2880

Current chains

Chain A

50S subunit

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19