IL_6O8X_049

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6O8X|1|A|U|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_049 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1784

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6O8X|1|A|C|1245
6O8X|1|A|G|1246
6O8X|1|A|U|1247
6O8X|1|A|U|1248
6O8X|1|A|G|1249
6O8X|1|A|A|1250
6O8X|1|A|A|1251
6O8X|1|A|G|1252
*
6O8X|1|A|U|1271
6O8X|1|A|G|1272
6O8X|1|A|G|1273
6O8X|1|A|A|1274
6O8X|1|A|G|1275

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20