IL_6O8X_175

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UGAG*CAG

Length

7 nucleotides

Bulged bases

6O8X|1|a|A|1457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8X_175 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1516

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6O8X|1|a|U|1455
6O8X|1|a|G|1456
6O8X|1|a|A|1457
6O8X|1|a|G|1458
*
6O8X|1|a|C|1475
6O8X|1|a|A|1476
6O8X|1|a|G|1477

Current chains

Chain a

16S rRNA

Nearby chains

Chain Q

50S ribosomal protein L19

Chain t

30S ribosomal protein S20