IL_6O8Z_072

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_072 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1441

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6O8Z|1|A|A|1870
6O8Z|1|A|G|1871
6O8Z|1|A|G|1872
6O8Z|1|A|A|1873
6O8Z|1|A|U|1874
*
6O8Z|1|A|A|1896
6O8Z|1|A|G|1897
6O8Z|1|A|A|1898
6O8Z|1|A|A|1899
6O8Z|1|A|U|1900

Current chains

Chain A

23S rRNA

Nearby chains