IL_6O8Z_079

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6O8Z|1|A|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_079 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1926

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

6O8Z|1|A|G|2084
6O8Z|1|A|A|2085
*
6O8Z|1|A|U|2452
6O8Z|1|A|A|2453
6O8Z|1|A|C|2454
6O8Z|1|A|C|2455

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2