IL_6O8Z_117
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGAUUGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6O8Z_117 not in the Motif Atlas
- Geometric match to IL_1DFU_001
- Geometric discrepancy: 0.2464
- The information below is about IL_1DFU_001
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6O8Z|1|B|C|69
6O8Z|1|B|G|70
6O8Z|1|B|A|71
6O8Z|1|B|U|72
6O8Z|1|B|U|73
6O8Z|1|B|G|74
6O8Z|1|B|U|75
6O8Z|1|B|A|76
6O8Z|1|B|G|77
*
6O8Z|1|B|U|95
6O8Z|1|B|G|96
6O8Z|1|B|A|97
6O8Z|1|B|G|98
6O8Z|1|B|A|99
6O8Z|1|B|G|100
6O8Z|1|B|U|101
6O8Z|1|B|A|102
6O8Z|1|B|G|103
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
- Chain X
- 50S ribosomal protein L27
Coloring options: