IL_6O8Z_127

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6O8Z|1|a|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O8Z_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1862

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6O8Z|1|a|G|153
6O8Z|1|a|G|154
6O8Z|1|a|A|155
6O8Z|1|a|U|156
6O8Z|1|a|A|157
6O8Z|1|a|A|158
6O8Z|1|a|C|159
*
6O8Z|1|a|G|174
6O8Z|1|a|C|175
6O8Z|1|a|U|176
6O8Z|1|a|A|177
6O8Z|1|a|A|178
6O8Z|1|a|U|179
6O8Z|1|a|A|180
6O8Z|1|a|C|181

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20