IL_6O90_050

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_050 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.1172

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6O90|1|A|A|1299
6O90|1|A|U|1300
6O90|1|A|G|1301
6O90|1|A|A|1302
6O90|1|A|G|1303
6O90|1|A|U|1304
6O90|1|A|A|1305
6O90|1|A|G|1306
*
6O90|1|A|U|2025
6O90|1|A|G|2026
6O90|1|A|A|2027
6O90|1|A|A|2028
6O90|1|A|A|2029
6O90|1|A|U|2030
6O90|1|A|U|2031

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L22