Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6O90_1041/A/60:69Pseudoknot with intercalation
homologous
HL_4WF9_067
HL_17803.1
HL_6O90_0011/A/68:75No text annotation
homologous
HL_4WF9_001
HL_08550.2
HL_6O90_0021/A/88:96Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_6O90_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_6O90_0041/A/137:144GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_98423.3
HL_6O90_0051/A/160:170No text annotation
homologous
HL_5J7L_138
NA
HL_6O90_0061/A/197:204No text annotation
homologous
HL_7RQB_006
NA
HL_6O90_0071/A/228:233No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_6O90_0081/A/249:255No text annotation
homologous
HL_4WF9_008
HL_76371.2
HL_6O90_0091/A/282:289Externally structured
geometric
HL_8C3A_022
NA
HL_6O90_0101/A/342:349T-loop with 1 bulged base
geometric
HL_7A0S_010
HL_13999.3
HL_6O90_0111/A/356:360No text annotation
homologous
HL_4WF9_011
HL_75660.7
HL_6O90_0121/A/364:372T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6O90_0131/A/421:433No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_6O90_0141/A/450:457No text annotation
homologous
HL_7RQB_014
NA
HL_6O90_0151/A/502:507GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_6O90_0161/A/527:532GNRA
homologous
HL_7RQB_016
NA
HL_6O90_0171/A/581:588No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_6O90_0181/A/603:612T-loop with 2 stacked bulged bases
geometric
HL_4WF9_018
HL_33597.3
HL_6O90_0191/A/649:655No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_6O90_0201/A/668:673GNRA
homologous
HL_4WF9_020
HL_34789.4
HL_6O90_0211/A/680:686No text annotation
homologous
HL_7RQB_021
NA
HL_6O90_0221/A/751:760No text annotation
geometric
HL_8H9D_001
NA
HL_6O90_0231/A/784:793No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6O90_1051/A/819:825No text annotation
homologous
HL_5J7L_156
NA
HL_6O90_0251/A/866:871No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_6O90_0271/A/995:1002GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_6O90_0281/A/1018:1025No text annotation
homologous
HL_5J7L_160
NA
HL_6O90_0311/A/1259:1264GNRA
homologous
HL_7A0S_031
HL_34789.4
HL_6O90_0321/A/1317:1325T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.3
HL_6O90_0331/A/1360:1366Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_49081.1
HL_6O90_0341/A/1399:1404GNRA
homologous
HL_5J7L_167
NA
HL_6O90_0351/A/1425:1434No text annotation
homologous
HL_4WF9_035
HL_77449.1
HL_6O90_0361/A/1493:1504No text annotation
HL_6O90_0371/A/1534:1540Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_6O90_0381/A/1574:1587No text annotation
HL_6O90_0391/A/1611:1614Mini UNCG
homologous
HL_5J7L_172
NA
HL_6O90_0401/A/1655:1662No text annotation
homologous
HL_4WF9_038
HL_28592.2
HL_6O90_0411/A/1673:1679GNRA
homologous
HL_5J7L_174
NA
HL_6O90_0421/A/1734:1739UNCG
geometric
HL_5D5L_003
HL_61337.3
HL_6O90_0431/A/1755:1760No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_6O90_0441/A/1766:1770No text annotation
homologous
HL_4WF9_042
HL_80709.5
HL_6O90_0451/A/1791:1801No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6O90_0461/A/1820:1825GNRA
homologous
HL_7RQB_046
NA
HL_6O90_0471/A/1883:1886No text annotation
HL_6O90_0481/A/1924:1934No text annotation
geometric
HL_5TBW_049
NA
HL_6O90_0491/A/1963:1971No text annotation
homologous
HL_5J7L_182
NA
HL_6O90_0501/A/2041:2050No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6O90_0521/A/2223:2229No text annotation
homologous
HL_5J7L_185
NA
HL_6O90_0531/A/2262:2270No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_6O90_0541/A/2278:2290No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_6O90_0551/A/2317:2327No text annotation
homologous
HL_7RQB_055
NA
HL_6O90_0561/A/2338:2345Pseudoknot geometry
homologous
HL_4WF9_052
HL_52651.2
HL_6O90_0571/A/2369:2376GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_6O90_0581/A/2388:2393GNRA
homologous
HL_7RQB_058
NA
HL_6O90_0591/A/2418:2427No text annotation
homologous
HL_4WF9_055
HL_51853.2
HL_6O90_0601/A/2485:2493No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6O90_0611/A/2542:2549GNRA variation
homologous
HL_5J7L_194
NA
HL_6O90_0621/A/2565:2571No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6O90_0631/A/2608:2613GNRA
homologous
HL_5J7L_196
NA
HL_6O90_0641/A/2672:2677GNRA
homologous
HL_5J7L_197
NA
HL_6O90_0651/A/2715:2720Ribsomal LSU H95
homologous
HL_4WF9_061
HL_12125.2
HL_6O90_0661/A/2759:2773No text annotation
homologous
HL_4WF9_062
HL_53269.2
HL_6O90_0671/A/2807:2814Externally structured
geometric
HL_5TBW_022
NA
HL_6O90_0681/A/2830:2838No text annotation
homologous
HL_7RQB_068
NA
HL_6O90_0691/A/2867:2872GNRA
homologous
HL_7RQB_069
NA
HL_6O90_0701/B/36:42No text annotation
homologous
HL_5J7L_203
NA
HL_6O90_0711/B/84:88No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_6O90_0721/a/9:19No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_6O90_0741/a/164:169GNRA
homologous
HL_6CZR_074
NA
HL_6O90_0751/a/199:204No text annotation
geometric
HL_5TBW_006
NA
HL_6O90_1081/a/224:229Mini UNCG
homologous
HL_4LFB_005
HL_90436.3
HL_6O90_0771/a/274:282GNRA related
homologous
HL_5J7L_006
NA
HL_6O90_0781/a/311:316GNRA
homologous
HL_5J7L_007
NA
HL_6O90_0791/a/335:348No text annotation
homologous
HL_6CZR_079
NA
HL_6O90_0801/a/357:362UNCG
homologous
HL_5J7L_009
NA
HL_6O90_0811/a/394:399GNRA
homologous
HL_4LFB_010
HL_34789.4
HL_6O90_0821/a/434:439UNCG
homologous
HL_4LFB_011
HL_61337.3
HL_6O90_1061/a/461:503No text annotation
HL_6O90_0831/a/472:492No text annotation
HL_6O90_0841/a/537:542GNRA variation
geometric
HL_1JID_001
HL_34789.4
HL_6O90_0851/a/631:639No text annotation
geometric
HL_7RQB_011
NA
HL_6O90_0861/a/704:713No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_6O90_0871/a/741:746GNRA
homologous
HL_5J7L_016
NA
HL_6O90_0881/a/801:811No text annotation
homologous
HL_5J7L_017
NA
HL_6O90_0901/a/878:883GNRA
homologous
HL_4LFB_019
HL_34789.4
HL_6O90_0911/a/913:918GNRA
homologous
HL_4LFB_020
HL_34789.4
HL_6O90_0921/a/979:988No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_6O90_0931/a/1028:1033GNRA
homologous
HL_4LFB_022
HL_34789.4
HL_6O90_0951/a/1092:1097GNRA
homologous
HL_5J7L_023
NA
HL_6O90_0961/a/1105:1112T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_6O90_0981/a/1180:1186GNRA
homologous
HL_4LFB_027
HL_34789.4
HL_6O90_0991/a/1280:1285GNRA
homologous
HL_5J7L_027
NA
HL_6O90_1001/a/1329:1338T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6O90_1011/a/1371:1381No text annotation
homologous
HL_5J7L_029
NA
HL_6O90_1021/a/1464:1470No text annotation
HL_6O90_1031/a/1531:1536GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6O90_024No text annotation
HL_6O90_026No text annotation
HL_6O90_029No text annotation
HL_6O90_107No text annotation
HL_6O90_030No text annotation
HL_6O90_051No text annotation
HL_6O90_073No text annotation
HL_6O90_076No text annotation
HL_6O90_089No text annotation
HL_6O90_094No text annotation
HL_6O90_097No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6O90_0011/A/25:31,
1/A/549:555
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_6O90_0021/A/37:38,
1/A/482:484
Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_6O90_0031/A/44:45,
1/A/474:476
Minor groove platform
homologous
IL_5J7L_247
NA
IL_6O90_1761/A/44:46,
1/A/473:476
No text annotation
homologous
IL_9DFE_003
NA
IL_6O90_0041/A/82:86,
1/A/98:105
Kink-turn
homologous
IL_4WF9_004
IL_71972.1
IL_6O90_0051/A/153:156,
1/A/174:177
Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
IL_71194.2
IL_6O90_0061/A/186:187,
1/A/215:217
Single stack bend
homologous
IL_7A0S_005
IL_15011.2
IL_6O90_0071/A/190:197,
1/A/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_6O90_0081/A/241:248,
1/A/256:262
8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_62167.3
IL_6O90_0091/A/305:306,
1/A/403:406
Major groove minor groove platform; mini C-loop
geometric
IL_4PDB_002
IL_73108.2
IL_6O90_0101/A/309:315,
1/A/397:400
No text annotation
IL_6O90_0111/A/317:319,
1/A/394:395
Single bulged A
geometric
IL_1JZV_002
IL_14190.2
IL_6O90_0121/A/320:322,
1/A/392:393
Single bulged C
geometric
IL_6ZDP_001
IL_05642.2
IL_6O90_0131/A/330:332,
1/A/380:384
No text annotation
homologous
IL_5J7L_254
NA
IL_6O90_0141/A/340:342,
1/A/349:351
Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.3
IL_6O90_0151/A/521:524,
1/A/535:548
No text annotation
homologous
IL_4WF9_015
IL_44923.1
IL_6O90_0161/A/575:578,
1/A/591:594
Double sheared
homologous
IL_4WF9_016
IL_58355.2
IL_6O90_0171/A/601:603,
1/A/612:614
Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_71625.3
IL_6O90_0181/A/643:647,
1/A/657:661
AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.3
IL_6O90_0191/A/712:714,
1/A/846:849
No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_6O90_0201/A/714:718,
1/A/839:846
tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_73855.1
IL_6O90_0211/A/720:722,
1/A/835:837
Isolated non-canonical cWW pair
geometric
IL_5MWI_002
IL_01003.3
IL_6O90_0221/A/737:738,
1/A/803:805
Single bulged A
homologous
IL_5J7L_261
NA
IL_6O90_0231/A/742:743,
1/A/768:770
Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_6O90_0241/A/743:747,
1/A/764:768
Triple sheared
homologous
IL_4WF9_024
IL_15190.2
IL_6O90_0251/A/778:780,
1/A/797:798
Major groove platform
homologous
IL_5J7L_264
NA
IL_6O90_0261/A/815:817,
1/A/827:831
Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_6O90_0271/A/877:878,
1/A/980:982
Single stack bend
homologous
IL_7A0S_022
IL_15011.2
IL_6O90_0281/A/883:888,
1/A/973:975
Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_6O90_0291/A/888:889,
1/A/971:973
90 degree turn
homologous
IL_7A0S_024
IL_79144.1
IL_6O90_0301/A/893:894,
1/A/965:967
Single bulged U
homologous
IL_4WF9_030
IL_97561.3
IL_6O90_0311/A/896:903,
1/A/956:963
No text annotation
IL_6O90_1981/A/897:909,
1/A/950:962
No text annotation
IL_6O90_0321/A/903:910,
1/A/949:956
No text annotation
IL_6O90_0341/A/916:920,
1/A/939:943
No text annotation
IL_6O90_0361/A/992:994,
1/A/1003:1005
Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_01003.3
IL_6O90_0371/A/1034:1036,
1/A/1199:1200
Single bulged C
homologous
IL_5J7L_276
NA
IL_6O90_0381/A/1038:1042,
1/A/1193:1197
UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_6O90_0391/A/1044:1051,
1/A/1190:1191
SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_6O90_0401/A/1051:1053,
1/A/1189:1190
Single bulged U
geometric
IL_4WF9_038
IL_97561.3
IL_6O90_0411/A/1058:1064,
1/A/1180:1184
Kink-turn related
homologous
IL_5J7L_280
NA
IL_6O90_0421/A/1064:1070,
1/A/1164:1180
No text annotation
geometric
IL_4WF9_040
IL_50715.4
IL_6O90_0431/A/1071:1074,
1/A/1161:1163
Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_76400.1
IL_6O90_0441/A/1083:1091,
1/A/1148:1152
Kink-turn
homologous
IL_5J7L_284
NA
IL_6O90_1811/A/1092:1098,
1/A/1120:1147
No text annotation
IL_6O90_0461/A/1234:1236,
1/A/1284:1287
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.5
IL_6O90_0471/A/1242:1244,
1/A/1276:1278
Isolated cWH basepair
homologous
IL_4WF9_045
IL_10892.2
IL_6O90_0481/A/1245:1252,
1/A/1271:1275
Kink-turn
homologous
IL_7RQB_047
NA
IL_6O90_0491/A/1256:1258,
1/A/1265:1267
Intercalated cWW
homologous
IL_4WF9_047
IL_53541.1
IL_6O90_0501/A/1299:1306,
1/A/2025:2031
8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_62167.3
IL_6O90_0511/A/1346:1349,
1/A/1646:1647
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6O90_0521/A/1355:1359,
1/A/1367:1369
Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_06671.1
IL_6O90_0531/A/1387:1391,
1/A/1412:1416
UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_6O90_0541/A/1393:1397,
1/A/1406:1410
tSH-tHW-tHS
homologous
IL_4WF9_052
IL_05821.1
IL_6O90_0551/A/1446:1458,
1/A/1627:1635
No text annotation
IL_6O90_0561/A/1459:1463,
1/A/1623:1626
Other IL
homologous
IL_4WF9_054
IL_74317.1
IL_6O90_1821/A/1459:1465,
1/A/1621:1626
tSH-tHW-tWH-tHS
geometric
IL_1KD4_001
IL_96590.1
IL_6O90_0571/A/1474:1477,
1/A/1603:1607
No text annotation
IL_6O90_1831/A/1479:1482,
1/A/1597:1601
tSH-tHW
homologous
IL_5J7L_297
NA
IL_6O90_0591/A/1511:1514,
1/A/1564:1569
No text annotation
IL_6O90_0601/A/1518:1521,
1/A/1557:1560
Double sheared
geometric
IL_5J7L_333
NA
IL_6O90_0611/A/1524:1526,
1/A/1548:1554
No text annotation
IL_6O90_0621/A/1694:1699,
1/A/2018:2020
No text annotation
homologous
IL_4WF9_062
IL_12566.5
IL_6O90_0631/A/1706:1708,
1/A/2009:2011
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6O90_0641/A/1709:1712,
1/A/2007:2008
Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_74641.2
IL_6O90_1861/A/1709:1717,
1/A/2004:2008
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6O90_0651/A/1712:1717,
1/A/2004:2007
Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_6O90_0661/A/1729:1734,
1/A/1739:1745
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_6O90_0671/A/1784:1785,
1/A/1994:1996
Single bulged A
homologous
IL_5J7L_312
NA
IL_6O90_0681/A/1812:1818,
1/A/1827:1835
Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_6O90_0691/A/1851:1854,
1/A/1916:1917
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6O90_0701/A/1855:1856,
1/A/1912:1915
Major groove intercalation
homologous
IL_4WF9_071
IL_71421.2
IL_6O90_0711/A/1860:1863,
1/A/1907:1908
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6O90_0721/A/1865:1869,
1/A/1901:1905
UAA/GAN with extra stack
homologous
IL_4WF9_073
IL_89021.4
IL_6O90_0731/A/1870:1874,
1/A/1896:1900
Triple sheared
homologous
IL_7RQB_075
NA
IL_6O90_0741/A/1878:1881,
1/A/1888:1892
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6O90_0751/A/1947:1948,
1/A/1978:1981
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_6O90_0761/A/1948:1959,
1/A/1975:1978
No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_6O90_0771/A/2064:2066,
1/A/2631:2632
Major groove platform
homologous
IL_7RQB_078
NA
IL_6O90_0781/A/2068:2070,
1/A/2626:2629
No text annotation
homologous
IL_5J7L_321
NA
IL_6O90_0791/A/2081:2083,
1/A/2456:2457
Single bulged U
homologous
IL_7RQB_080
NA
IL_6O90_0801/A/2084:2085,
1/A/2452:2455
Minor groove platform
homologous
IL_7RQB_081
NA
IL_6O90_0811/A/2095:2097,
1/A/2250:2253
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6O90_0821/A/2109:2111,
1/A/2206:2208
Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_01003.3
IL_6O90_1871/A/2113:2119,
1/A/2198:2204
No text annotation
IL_6O90_0851/A/2124:2134,
1/A/2192:2193
Multiple bulged bases
geometric
IL_7A0S_097
IL_44609.2
IL_6O90_0891/A/2216:2218,
1/A/2234:2235
Single bulged U
homologous
IL_5J7L_331
NA
IL_6O90_0901/A/2311:2313,
1/A/2331:2335
Isolated tHS basepair with bulges
homologous
IL_4WF9_086
IL_14250.1
IL_6O90_0911/A/2364:2367,
1/A/2378:2381
Double sheared
homologous
IL_5J7L_333
NA
IL_6O90_0921/A/2415:2417,
1/A/2428:2429
Single bulged U
homologous
IL_5J7L_334
NA
IL_6O90_0931/A/2467:2468,
1/A/2512:2514
Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_6O90_0941/A/2468:2469,
1/A/2510:2512
Major groove platform
geometric
IL_7RQB_092
NA
IL_6O90_0951/A/2471:2473,
1/A/2507:2508
Major groove platform
geometric
IL_7A0S_085
IL_48076.8
IL_6O90_1901/A/2471:2475,
1/A/2503:2508
No text annotation
IL_6O90_0961/A/2473:2475,
1/A/2503:2507
Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_36931.2
IL_6O90_0971/A/2480:2484,
1/A/2494:2498
Double sheared with non-canonical cWW
homologous
IL_4WF9_093
IL_87767.2
IL_6O90_0981/A/2521:2522,
1/A/2594:2596
Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_6O90_0991/A/2524:2526,
1/A/2588:2592
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_6O90_1001/A/2526:2527,
1/A/2585:2588
No text annotation
geometric
IL_4WF9_096
IL_44609.2
IL_6O90_1011/A/2536:2537,
1/A/2554:2557
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6O90_1021/A/2605:2606,
1/A/2615:2617
Single bulged A
homologous
IL_7RQB_101
NA
IL_6O90_1041/A/2666:2672,
1/A/2677:2682
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4WF9_100
IL_16458.6
IL_6O90_1051/A/2694:2698,
1/A/2739:2741
C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_6O90_1061/A/2701:2705,
1/A/2732:2736
UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_6O90_1071/A/2709:2710,
1/A/2725:2728
Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.2
IL_6O90_1081/A/2751:2756,
1/A/2776:2781
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_6O90_1091/A/2849:2850,
1/A/2889:2891
Major groove intercalation
homologous
IL_5J7L_352
NA
IL_6O90_1101/A/2854:2857,
1/A/2881:2885
No text annotation
homologous
IL_7RQB_109
NA
IL_6O90_1991/A/2858:2863,
1/A/2876:2880
tHS double platform
homologous
IL_4WF9_108
IL_48489.1
IL_6O90_1121/B/15:16,
1/B/63:65
Major groove intercalation
homologous
IL_5J7L_355
NA
IL_6O90_1131/B/21:28,
1/B/52:58
No text annotation
IL_6O90_1141/B/28:30,
1/B/48:52
No text annotation
homologous
IL_4WF9_114
NA
IL_6O90_1151/B/32:36,
1/B/42:46
Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_6O90_2001/B/69:77,
1/B/95:103
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_6O90_1161/a/27:29,
1/a/567:568
Single bulged G
homologous
IL_5J7L_001
NA
IL_6O90_1171/a/41:42,
1/a/411:413
Single bulged A
homologous
IL_5J7L_002
NA
IL_6O90_1181/a/44:49,
1/a/374:376
No text annotation
geometric
IL_5J7L_003
NA
IL_6O90_1191/a/51:53,
1/a/371:372
Minor groove platform
homologous
IL_4LFB_004
IL_34520.3
IL_6O90_1201/a/60:63,
1/a/108:109
No text annotation
geometric
IL_9E6Q_076
IL_80025.1
IL_6O90_1211/a/64:66,
1/a/105:107
Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_01003.3
IL_6O90_1221/a/134:137,
1/a/246:247
Minor groove platform related
geometric
IL_3K0J_002
IL_34520.3
IL_6O90_2011/a/138:142,
1/a/242:245
Minor groove platform related
homologous
IL_5J7L_010
NA
IL_6O90_1261/a/257:262,
1/a/292:299
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6O90_1271/a/264:267,
1/a/289:290
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_6O90_1281/a/307:308,
1/a/319:323
C-loop
homologous
IL_5J7L_016
NA
IL_6O90_1291/a/382:384,
1/a/407:408
Single bulged U
geometric
IL_5J7L_017
NA
IL_6O90_1301/a/386:390,
1/a/404:405
C-loop
geometric
IL_6CZR_127
NA
IL_6O90_2021/a/390:391,
1/a/402:404
Single bulged G
homologous
IL_5J7L_019
NA
IL_6O90_1331/a/519:526,
1/a/555:556
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6O90_1341/a/530:536,
1/a/543:551
Kink-turn related
homologous
IL_5J7L_025
NA
IL_6O90_1351/a/584:590,
1/a/896:897
No text annotation
homologous
IL_6CZR_134
NA
IL_6O90_1361/a/595:599,
1/a/772:776
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6O90_1371/a/609:611,
1/a/659:660
Major groove platform
homologous
IL_5J7L_028
NA
IL_6O90_1381/a/612:614,
1/a/654:658
No text annotation
homologous
IL_6CZR_361
NA
IL_6O90_1391/a/619:627,
1/a/643:649
No text annotation
IL_6O90_1401/a/669:670,
1/a/766:769
Major groove platform; stack outside cWW
geometric
IL_5J7L_031
NA
IL_6O90_1951/a/670:674,
1/a/761:766
No text annotation
IL_6O90_1411/a/671:674,
1/a/761:765
No text annotation
IL_6O90_1421/a/677:681,
1/a/755:758
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6O90_1961/a/688:692,
1/a/728:732
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.3
IL_6O90_1441/a/699:703,
1/a/714:721
Kink-turn
geometric
IL_7A0S_004
IL_94910.1
IL_6O90_1451/a/789:793,
1/a/819:820
Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6O90_1461/a/794:798,
1/a/814:818
tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_6O90_1471/a/903:910,
1/a/921:926
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_6O90_1481/a/938:939,
1/a/1408:1410
Single bulged A
homologous
IL_4LFB_035
IL_14190.2
IL_6O90_1491/a/941:943,
1/a/1405:1406
Single bulged G
homologous
IL_5J7L_040
NA
IL_6O90_1501/a/949:951,
1/a/1395:1399
Minor groove platform
homologous
IL_5J7L_041
NA
IL_6O90_1511/a/969:970,
1/a/1241:1243
Minor groove platform
homologous
IL_5J7L_042
NA
IL_6O90_1521/a/1009:1016,
1/a/1056:1061
No text annotation
IL_6O90_1531/a/1064:1066,
1/a/1223:1224
Single bulged U
homologous
IL_5J7L_046
NA
IL_6O90_1971/a/1068:1072,
1/a/1219:1221
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6O90_1551/a/1073:1074,
1/a/1214:1218
Minor groove platform
homologous
IL_5J7L_048
NA
IL_6O90_1561/a/1076:1077,
1/a/1210:1212
Single bulged A
geometric
IL_5J7L_049
NA
IL_6O90_1571/a/1077:1079,
1/a/1208:1210
Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_6O90_1581/a/1140:1143,
1/a/1160:1164
Minor groove platform
homologous
IL_6CZR_158
NA
IL_6O90_1601/a/1173:1176,
1/a/1190:1196
No text annotation
geometric
IL_5J7L_053
NA
IL_6O90_1611/a/1261:1268,
1/a/1299:1306
No text annotation
IL_6O90_1621/a/1270:1273,
1/a/1292:1297
180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_6O90_1631/a/1274:1277,
1/a/1288:1291
Double sheared
geometric
IL_4V88_471
NA
IL_6O90_1641/a/1318:1323,
1/a/1344:1349
No text annotation
geometric
IL_4V88_462
NA
IL_6O90_1651/a/1414:1416,
1/a/1517:1520
No text annotation
geometric
IL_5J7L_058
NA
IL_6O90_1661/a/1416:1419,
1/a/1513:1517
No text annotation
geometric
IL_4V88_464
NA
IL_6O90_1671/a/1420:1422,
1/a/1510:1512
Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_6O90_1681/a/1422:1424,
1/a/1507:1510
Decoding loop related
geometric
IL_3C3Z_002
IL_53541.1
IL_6O90_1691/a/1427:1429,
1/a/1502:1504
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_6O90_1701/a/1431:1434,
1/a/1497:1500
Double sheared
homologous
IL_5J7L_062
NA
IL_6O90_1711/a/1439:1442,
1/a/1489:1492
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_6O90_1721/a/1445:1450,
1/a/1482:1486
Triple sheared related
geometric
IL_5J7L_063
NA
IL_6O90_1731/a/1450:1452,
1/a/1480:1482
Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_01003.3
IL_6O90_1741/a/1455:1458,
1/a/1475:1477
Isolated tHS basepair with bulges
geometric
IL_7RQB_012
NA
IL_6O90_1751/a/1460:1463,
1/a/1471:1473
No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_6O90_177Tandem non-canonical cWW pairs
IL_6O90_178No text annotation
IL_6O90_033Isolated cWS basepair
IL_6O90_179No text annotation
IL_6O90_035No text annotation
IL_6O90_180No text annotation
IL_6O90_045No text annotation
IL_6O90_058No text annotation
IL_6O90_184No text annotation
IL_6O90_185No text annotation
IL_6O90_083Isolated non-canonical cWW pair
IL_6O90_084No text annotation
IL_6O90_086No text annotation
IL_6O90_087Not an internal loop
IL_6O90_088No text annotation
IL_6O90_188No text annotation
IL_6O90_189Isolated non-canonical cWW pair
IL_6O90_103No text annotation
IL_6O90_111No text annotation
IL_6O90_191No text annotation
IL_6O90_192No text annotation
IL_6O90_193No text annotation
IL_6O90_123No text annotation
IL_6O90_124Isolated cWH basepair
IL_6O90_125tWH-tWH-tHW-tHW
IL_6O90_131Single bulged G, near cWW
IL_6O90_132No text annotation
IL_6O90_194No text annotation
IL_6O90_143No text annotation
IL_6O90_154Tandem non-canonical cWW pairs
IL_6O90_159Minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6O90_0011/A/31:32,
1/A/514:521,
1/A/548:549
No text annotation
homologous
J3_5J7L_036
NA
J3_6O90_0241/A/33:36,
1/A/485:501,
1/A/508:513
No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_6O90_0251/A/57:58,
1/A/71:77,
1/A/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_6O90_0021/A/57:68,
1/A/75:77,
1/A/110:114
No text annotation
geometric
J3_4WF9_001
J3_47707.1
J3_6O90_0031/A/272:276,
1/A/295:302,
1/A/409:410
No text annotation
homologous
J3_7RQB_003
NA
J3_6O90_0261/A/334:338,
1/A/353:362,
1/A/374:378
No text annotation
homologous
J3_5J7L_068
NA
J3_6O90_0041/A/723:729,
1/A/813:815,
1/A/831:834
No text annotation
homologous
J3_5J7L_038
NA
J3_6O90_0051/A/738:740,
1/A/772:776,
1/A/800:803
No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_6O90_0061/A/1334:1339,
1/A/1668:1670,
1/A/1682:1685
No text annotation
homologous
J3_4WF9_004
J3_32852.7
J3_6O90_0271/A/1342:1345,
1/A/1648:1654,
1/A/1663:1665
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6O90_0391/A/1380:1386,
1/A/1417:1421,
1/A/1438:1439
No text annotation
homologous
J3_7A0S_018
J3_94309.1
J3_6O90_0291/A/1466:1471,
1/A/1610:1611,
1/A/1614:1620
No text annotation
homologous
J3_7A0S_019
J3_34864.3
J3_6O90_0301/A/1486:1511,
1/A/1569:1574,
1/A/1587:1593
No text annotation
J3_6O90_0081/A/2105:2107,
1/A/2210:2215,
1/A/2236:2242
No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_6O90_0311/A/2296:2298,
1/A/2398:2409,
1/A/2435:2441
No text annotation
homologous
J3_5J7L_070
NA
J3_6O90_0091/A/2309:2311,
1/A/2335:2337,
1/A/2346:2351
No text annotation
homologous
J3_4WF9_008
J3_05327.1
J3_6O90_0101/A/2531:2534,
1/A/2559:2561,
1/A/2575:2581
No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6O90_0321/A/2825:2826,
1/A/2842:2847,
1/A/2893:2897
No text annotation
homologous
J3_4WF9_021
J3_76911.2
J3_6O90_0121/B/9:14,
1/B/66:69,
1/B/103:107
No text annotation
J3_6O90_0131/a/43:44,
1/a/376:382,
1/a/408:410
No text annotation
homologous
J3_5J7L_001
NA
J3_6O90_0331/a/43:49,
1/a/374:382,
1/a/408:410
No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_6O90_0141/a/601:603,
1/a/666:669,
1/a/769:770
No text annotation
homologous
J3_5J7L_002
NA
J3_6O90_0341/a/601:603,
1/a/666:670,
1/a/766:770
No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_6O90_0151/a/687:688,
1/a/732:740,
1/a/747:749
No text annotation
homologous
J3_5J7L_003
NA
J3_6O90_0161/a/841:844,
1/a/873:877,
1/a/884:890
No text annotation
homologous
J3_5J7L_004
NA
J3_6O90_0351/a/949:955,
1/a/1359:1365,
1/a/1387:1399
No text annotation
J3_6O90_0171/a/959:962,
1/a/1250:1252,
1/a/1352:1355
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6O90_0181/a/971:978,
1/a/989:1000,
1/a/1236:1240
No text annotation
homologous
J3_4LFB_004
J3_88451.1
J3_6O90_0191/a/1006:1009,
1/a/1061:1063,
1/a/1225:1230
No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_6O90_0361/a/1006:1016,
1/a/1056:1063,
1/a/1225:1230
No text annotation
J3_6O90_0201/a/1079:1084,
1/a/1123:1129,
1/a/1202:1208
No text annotation
homologous
J3_5J7L_008
NA
J3_6O90_0211/a/1089:1090,
1/a/1099:1103,
1/a/1114:1118
No text annotation
homologous
J3_6CZR_024
NA
J3_6O90_0221/a/1132:1134,
1/a/1170:1173,
1/a/1196:1199
No text annotation
homologous
J3_5J7L_010
NA
J3_6O90_0381/a/1132:1134,
1/a/1170:1176,
1/a/1190:1199
No text annotation
homologous
J3_5J7L_054
NA
J3_6O90_0231/a/1252:1256,
1/a/1311:1318,
1/a/1349:1352
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_6O90_0011/A/271:272,
1/A/410:415,
1/A/439:446,
1/A/461:464
No text annotation
homologous
J4_4WF9_001
J4_94698.1
J4_6O90_0021/A/334:338,
1/A/353:356,
1/A/360:362,
1/A/374:378
No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_6O90_0031/A/638:641,
1/A/663:667,
1/A/674:678,
1/A/688:696
No text annotation
homologous
J4_4WF9_003
J4_69347.1
J4_6O90_0041/A/1307:1312,
1/A/1330:1331,
1/A/1688:1691,
1/A/2023:2024
No text annotation
homologous
J4_4WF9_004
J4_64571.6
J4_6O90_0051/A/1346:1350,
1/A/1374:1379,
1/A/1440:1441,
1/A/1640:1647
No text annotation
homologous
J4_4WF9_005
J4_77353.1
J4_6O90_0061/A/1349:1350,
1/A/1374:1379,
1/A/1440:1441,
1/A/1640:1646
No text annotation
homologous
J4_4WF9_006
J4_48150.1
J4_6O90_0071/A/1786:1790,
1/A/1802:1806,
1/A/1841:1845,
1/A/1988:1993
No text annotation
J4_6O90_0081/A/1847:1849,
1/A/1919:1920,
1/A/1938:1947,
1/A/1981:1986
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6O90_0091/A/2299:2303,
1/A/2357:2361,
1/A/2384:2386,
1/A/2395:2397
No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6O90_0101/A/2657:2660,
1/A/2688:2690,
1/A/2745:2749,
1/A/2783:2785
No text annotation
homologous
J4_5J7L_028
NA
J4_6O90_0111/a/120:128,
1/a/253:255,
1/a/301:304,
1/a/326:327
No text annotation
J4_6O90_0121/a/148:150,
1/a/184:193,
1/a/210:219,
1/a/234:236
No text annotation
J4_6O90_0131/a/590:592,
1/a/779:784,
1/a/825:836,
1/a/895:896
No text annotation
homologous
J4_5J7L_003
NA
J5_6O90_0011/A/48:55,
1/A/116:121,
1/A/130:131,
1/A/150:152,
1/A/178:180
No text annotation
homologous
J5_4WF9_001
J5_27223.1
J5_6O90_0021/A/271:276,
1/A/295:302,
1/A/409:415,
1/A/439:446,
1/A/461:464
No text annotation
J5_6O90_0031/A/570:572,
1/A/597:601,
1/A/614:616,
1/A/1298:1299,
1/A/2031:2032
No text annotation
homologous
J5_4WF9_003
J5_43153.6
J5_6O90_0101/A/621:626,
1/A/708:714,
1/A/846:852,
1/A/1233:1236,
1/A/1284:1293
No text annotation
J5_6O90_0051/A/1717:1725,
1/A/1749:1750,
1/A/1765:1766,
1/A/1770:1778,
1/A/2002:2004
No text annotation
homologous
J5_4WF9_005
J5_99177.1
J5_6O90_0061/A/2071:2078,
1/A/2460:2467,
1/A/2514:2521,
1/A/2596:2602,
1/A/2620:2625
No text annotation
J5_6O90_0071/A/2088:2091,
1/A/2257:2260,
1/A/2272:2273,
1/A/2295:2296,
1/A/2441:2449
No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_6O90_0081/a/33:36,
1/a/418:421,
1/a/451:456,
1/a/508:515,
1/a/560:563
No text annotation
J5_6O90_0091/a/55:58,
1/a/111:118,
1/a/329:331,
1/a/352:354,
1/a/365:369
No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_6O90_0011/A/46:47,
1/A/181:186,
1/A/217:227,
1/A/234:238,
1/A/265:269,
1/A/466:473
No text annotation
J6_6O90_0021/A/2088:2091,
1/A/2257:2260,
1/A/2272:2273,
1/A/2295:2298,
1/A/2398:2409,
1/A/2435:2449
No text annotation
J7_6O90_0011/A/857:862,
1/A/875:876,
1/A/983:986,
1/A/1011:1016,
1/A/1027:1031,
1/A/1203:1204,
1/A/1223:1228
No text annotation
J8_6O90_0011/A/9:16,
1/A/564:570,
1/A/2032:2037,
1/A/2054:2057,
1/A/2639:2644,
1/A/2802:2805,
1/A/2816:2822,
1/A/2900:2905
No text annotation

Problematic loops

#loop idProblemSequence
J3_6O90_007No text annotation
J3_6O90_028No text annotation
J3_6O90_011No text annotation
J3_6O90_037No text annotation
J3_6O90_040No text annotation
J5_6O90_004No text annotation

Coloring options:
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