IL_6O90_104

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_104 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1308

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6O90|1|A|U|2666
6O90|1|A|U|2667
6O90|1|A|A|2668
6O90|1|A|G|2669
6O90|1|A|U|2670
6O90|1|A|A|2671
6O90|1|A|C|2672
*
6O90|1|A|G|2677
6O90|1|A|G|2678
6O90|1|A|A|2679
6O90|1|A|C|2680
6O90|1|A|C|2681
6O90|1|A|G|2682

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6