IL_6O90_182

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAUGGA*UUCUAG

Length

13 nucleotides

Bulged bases

6O90|1|A|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O90_182 not in the Motif Atlas

Geometric match to IL_1KD4_001

Geometric discrepancy: 0.3933

The information below is about IL_1KD4_001

Detailed Annotation

tSH-tHW-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_96590.1

Basepair signature

cWW-tSH-tHW-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6O90|1|A|C|1459
6O90|1|A|A|1460
6O90|1|A|A|1461
6O90|1|A|U|1462
6O90|1|A|G|1463
6O90|1|A|G|1464
6O90|1|A|A|1465
*
6O90|1|A|U|1621
6O90|1|A|U|1622
6O90|1|A|C|1623
6O90|1|A|U|1624
6O90|1|A|A|1625
6O90|1|A|G|1626

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2