IL_6O97_011

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6O97|1|1A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_011 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.0856

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6O97|1|1A|C|288
6O97|1|1A|A|289
6O97|1|1A|G|290
*
6O97|1|1A|U|350
6O97|1|1A|G|351
6O97|1|1A|G|352
6O97|1|1A|G|353

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains