IL_6O97_253

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6O97|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O97_253 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5355

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6O97|1|2A|C|2129
6O97|1|2A|U|2130
6O97|1|2A|G|2131
6O97|1|2A|U|2132
6O97|1|2A|G|2133
6O97|1|2A|A|2134
6O97|1|2A|A|2135
6O97|1|2A|C|2136
*
6O97|1|2A|G|2155
6O97|1|2A|G|2156
6O97|1|2A|G|2157
6O97|1|2A|A|2158
6O97|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains