IL_6O9J_021

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6O9J|1|B|G|801, 6O9J|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_021 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0728

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6O9J|1|B|G|674
6O9J|1|B|A|675
6O9J|1|B|A|676
6O9J|1|B|A|677
6O9J|1|B|C|678
*
6O9J|1|B|G|799
6O9J|1|B|A|800
6O9J|1|B|G|801
6O9J|1|B|A|802
6O9J|1|B|U|803
6O9J|1|B|A|804
6O9J|1|B|G|805
6O9J|1|B|C|806

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15