IL_6O9J_109

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_109 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.1694

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6O9J|1|B|U|2847
6O9J|1|B|G|2848
6O9J|1|B|U|2849
6O9J|1|B|A|2850
6O9J|1|B|A|2851
6O9J|1|B|G|2852
*
6O9J|1|B|U|2865
6O9J|1|B|U|2866
6O9J|1|B|G|2867
6O9J|1|B|A|2868
6O9J|1|B|G|2869

Current chains

Chain B

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19