IL_6O9J_121

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6O9J|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6O9J|1|a|G|147
6O9J|1|a|G|148
6O9J|1|a|A|149
6O9J|1|a|U|150
6O9J|1|a|A|151
6O9J|1|a|A|152
6O9J|1|a|C|153
*
6O9J|1|a|G|168
6O9J|1|a|C|169
6O9J|1|a|U|170
6O9J|1|a|A|171
6O9J|1|a|A|172
6O9J|1|a|U|173
6O9J|1|a|A|174
6O9J|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20