IL_6O9J_179

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9J_179 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6O9J|1|B|U|1851
6O9J|1|B|U|1852
6O9J|1|B|A|1853
6O9J|1|B|A|1854
6O9J|1|B|U|1855
6O9J|1|B|U|1856
6O9J|1|B|G|1857
6O9J|1|B|A|1858
6O9J|1|B|U|1859
6O9J|1|B|G|1860
*
6O9J|1|B|U|1882
6O9J|1|B|U|1883
6O9J|1|B|G|1884
6O9J|1|B|A|1885
6O9J|1|B|U|1886
6O9J|1|B|C|1887
6O9J|1|B|G|1888
6O9J|1|B|A|1889
6O9J|1|B|A|1890
6O9J|1|B|G|1891

Current chains

Chain B

23S rRNA

Nearby chains