IL_6O9K_016

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6O9K|1|A|G|801, 6O9K|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1485

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6O9K|1|A|G|674
6O9K|1|A|A|675
6O9K|1|A|A|676
6O9K|1|A|A|677
6O9K|1|A|C|678
*
6O9K|1|A|G|799
6O9K|1|A|A|800
6O9K|1|A|G|801
6O9K|1|A|A|802
6O9K|1|A|U|803
6O9K|1|A|A|804
6O9K|1|A|G|805
6O9K|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15