IL_6O9K_041

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6O9K|1|A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_041 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.2927

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6O9K|1|A|G|1087
6O9K|1|A|A|1088
6O9K|1|A|A|1089
6O9K|1|A|A|1090
*
6O9K|1|A|U|1101
6O9K|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L10

Chain I

50S ribosomal protein L11

Chain Y

50S ribosomal protein L36