IL_6O9K_119

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6O9K|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6O9K_119 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1672

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6O9K|1|a|G|147
6O9K|1|a|G|148
6O9K|1|a|A|149
6O9K|1|a|U|150
6O9K|1|a|A|151
6O9K|1|a|A|152
6O9K|1|a|C|153
*
6O9K|1|a|G|168
6O9K|1|a|C|169
6O9K|1|a|U|170
6O9K|1|a|A|171
6O9K|1|a|A|172
6O9K|1|a|U|173
6O9K|1|a|A|174
6O9K|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20